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Here is a list of all documented files with brief descriptions:
ugene-1.3.2+repack/src/core/src/core_api/AppContext.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/AppContext.h [code]
ugene-1.3.2+repack/src/core/src/core_api/AppSettings.h [code]
ugene-1.3.2+repack/src/core/src/core_api/AppSettingsGUI.h [code]
ugene-1.3.2+repack/src/core/src/core_api/core_api.h [code]
ugene-1.3.2+repack/src/core/src/core_api/DBXRefRegistry.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/DBXRefRegistry.h [code]
ugene-1.3.2+repack/src/core/src/core_api/DNAAlphabet.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/DNAAlphabet.h [code]
ugene-1.3.2+repack/src/core/src/core_api/DNATranslation.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/DNATranslation.h [code]
ugene-1.3.2+repack/src/core/src/core_api/DocumentFormatConfigurators.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/DocumentFormatConfigurators.h [code]
ugene-1.3.2+repack/src/core/src/core_api/DocumentFormats.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/DocumentFormats.h [code]
ugene-1.3.2+repack/src/core/src/core_api/DocumentModel.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/DocumentModel.h [code]
ugene-1.3.2+repack/src/core/src/core_api/GHints.h [code]
ugene-1.3.2+repack/src/core/src/core_api/GObject.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/GObject.h [code]
ugene-1.3.2+repack/src/core/src/core_api/GObjectReference.h [code]
ugene-1.3.2+repack/src/core/src/core_api/IOAdapter.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/IOAdapter.h [code]
ugene-1.3.2+repack/src/core/src/core_api/Log.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/Log.h [code]
ugene-1.3.2+repack/src/core/src/core_api/LRegion.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/LRegion.h [code]
ugene-1.3.2+repack/src/core/src/core_api/MainWindow.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/MainWindow.h [code]
ugene-1.3.2+repack/src/core/src/core_api/NetworkConfiguration.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/NetworkConfiguration.h [code]
ugene-1.3.2+repack/src/core/src/core_api/ObjectViewModel.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/ObjectViewModel.h [code]
ugene-1.3.2+repack/src/core/src/core_api/PluginModel.h [code]
ugene-1.3.2+repack/src/core/src/core_api/PluginViewer.h [code]
ugene-1.3.2+repack/src/core/src/core_api/ProjectModel.h [code]
ugene-1.3.2+repack/src/core/src/core_api/ProjectView.h [code]
ugene-1.3.2+repack/src/core/src/core_api/ResourceTracker.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/ResourceTracker.h [code]
ugene-1.3.2+repack/src/core/src/core_api/ScriptRegistry.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/ScriptRegistry.h [code]
ugene-1.3.2+repack/src/core/src/core_api/SelectionModel.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/SelectionModel.h [code]
ugene-1.3.2+repack/src/core/src/core_api/ServiceModel.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/ServiceModel.h [code]
ugene-1.3.2+repack/src/core/src/core_api/ServiceTypes.h [code]
ugene-1.3.2+repack/src/core/src/core_api/Settings.h [code]
ugene-1.3.2+repack/src/core/src/core_api/StateLockableDataModel.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/StateLockableDataModel.h [code]
ugene-1.3.2+repack/src/core/src/core_api/Task.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/Task.h [code]
ugene-1.3.2+repack/src/core/src/core_api/UserApplicationsSettings.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/UserApplicationsSettings.h [code]
ugene-1.3.2+repack/src/core/src/core_api/Vector3D.cpp [code]
ugene-1.3.2+repack/src/core/src/core_api/Vector3D.h [code]
ugene-1.3.2+repack/src/core/src/datatype/AnnotationData.h [code]
ugene-1.3.2+repack/src/core/src/datatype/BioStruct3D.cpp [code]
ugene-1.3.2+repack/src/core/src/datatype/BioStruct3D.h [code]
ugene-1.3.2+repack/src/core/src/datatype/DNAChromatogram.h [code]
ugene-1.3.2+repack/src/core/src/datatype/DNASequence.cpp [code]
ugene-1.3.2+repack/src/core/src/datatype/DNASequence.h [code]
ugene-1.3.2+repack/src/core/src/datatype/MAlignment.cpp [code]
ugene-1.3.2+repack/src/core/src/datatype/MAlignment.h [code]
ugene-1.3.2+repack/src/core/src/datatype/PhyTree.cpp [code]
ugene-1.3.2+repack/src/core/src/datatype/PhyTree.h [code]
ugene-1.3.2+repack/src/core/src/document_format/ABIFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/ABIFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/BaseAlphabets.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/BaseTranslations.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/ClustalWAlnFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/ClustalWAlnFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/DNAAlphabetRegistryImpl.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/DNAAlphabetRegistryImpl.h [code]
ugene-1.3.2+repack/src/core/src/document_format/DNATranslationImpl.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/DNATranslationImpl.h [code]
ugene-1.3.2+repack/src/core/src/document_format/DocumentFormatUtils.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/DocumentFormatUtils.h [code]
ugene-1.3.2+repack/src/core/src/document_format/EMBLGenbankAbstractDocument.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/EMBLGenbankAbstractDocument.h [code]
ugene-1.3.2+repack/src/core/src/document_format/EMBLPlainTextFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/EMBLPlainTextFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/FastaFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/FastaFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/GenbankLocationParser.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/GenbankLocationParser.h [code]
ugene-1.3.2+repack/src/core/src/document_format/GenbankPlainTextFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/GenbankPlainTextFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/NewickFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/NewickFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/PDBFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/PDBFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/PlainTextFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/PlainTextFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/RawDNASequenceFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/RawDNASequenceFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/SCFFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/SCFFormat.h [code]
ugene-1.3.2+repack/src/core/src/document_format/StockholmFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/document_format/StockholmFormat.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/AnnotationSettings.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/AnnotationSettings.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/AnnotationTableObject.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/AnnotationTableObject.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/BioStruct3DObject.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/BioStruct3DObject.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/DNAChromatogramObject.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/DNAChromatogramObject.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/DNASequenceObject.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/DNASequenceObject.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/GObjectRelationRoles.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/GObjectRelationRoles.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/GObjectTypes.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/GObjectTypes.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/GObjectUtils.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/GObjectUtils.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/MAlignmentObject.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/MAlignmentObject.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/PhyTreeObject.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/PhyTreeObject.h [code]
ugene-1.3.2+repack/src/core/src/gobjects/TextObject.cpp [code]
ugene-1.3.2+repack/src/core/src/gobjects/TextObject.h [code]
ugene-1.3.2+repack/src/core/src/ioadapter/HttpFileAdapter.cpp [code]
ugene-1.3.2+repack/src/core/src/ioadapter/HttpFileAdapter.h [code]
ugene-1.3.2+repack/src/core/src/ioadapter/LocalFileAdapter.cpp [code]
ugene-1.3.2+repack/src/core/src/ioadapter/LocalFileAdapter.h [code]
ugene-1.3.2+repack/src/core/src/ioadapter/ZlibAdapter.cpp [code]
ugene-1.3.2+repack/src/core/src/ioadapter/ZlibAdapter.h [code]
ugene-1.3.2+repack/src/core/src/selection/AnnotationSelection.cpp [code]
ugene-1.3.2+repack/src/core/src/selection/AnnotationSelection.h [code]
ugene-1.3.2+repack/src/core/src/selection/DNASequenceSelection.h [code]
ugene-1.3.2+repack/src/core/src/selection/DocumentSelection.cpp [code]
ugene-1.3.2+repack/src/core/src/selection/DocumentSelection.h [code]
ugene-1.3.2+repack/src/core/src/selection/GObjectSelection.cpp [code]
ugene-1.3.2+repack/src/core/src/selection/GObjectSelection.h [code]
ugene-1.3.2+repack/src/core/src/selection/LRegionsSelection.cpp [code]
ugene-1.3.2+repack/src/core/src/selection/LRegionsSelection.h [code]
ugene-1.3.2+repack/src/core/src/selection/SelectionTypes.cpp [code]
ugene-1.3.2+repack/src/core/src/selection/SelectionTypes.h [code]
ugene-1.3.2+repack/src/core/src/selection/SelectionUtils.cpp [code]
ugene-1.3.2+repack/src/core/src/selection/SelectionUtils.h [code]
ugene-1.3.2+repack/src/core/src/selection/TextSelection.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/GTest.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/GTest.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/GTestFrameworkComponents.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/GTestFrameworkComponents.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/find_algo/FindAlgorithmTestFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/find_algo/FindAlgorithmTestFormat.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/AnnotationTableObjectTest.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/AnnotationTableObjectTest.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/BioStruct3DObjectTests.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/BioStruct3DObjectTests.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/DNASequenceObjectTests.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/DNASequenceObjectTests.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/DNATranslationImplTests.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/DNATranslationImplTests.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/DocumentModelTests.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/DocumentModelTests.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/TaskTests.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/TaskTests.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/XMLTestFormat.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/XMLTestFormat.h [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/XMLTestUtils.cpp [code]
ugene-1.3.2+repack/src/core/src/test_framework/xmltest/XMLTestUtils.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/DynTable.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/FindAlgorithm.cpp [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/FindAlgorithm.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/FindAlgorithmTask.cpp [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/FindAlgorithmTask.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/GAutoDeleteList.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/MSAUtils.cpp [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/MSAUtils.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/ORFAlgorithmTask.cpp [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/ORFAlgorithmTask.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/ORFFinder.cpp [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/ORFFinder.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/RingBuffer.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/RollingArray.h [code]
ugene-1.3.2+repack/src/core/src/util_algorithm/RollingMatrix.h [code]
ugene-1.3.2+repack/src/core/src/util_find_dialog/FindDialog.cpp [code]
ugene-1.3.2+repack/src/core/src/util_find_dialog/FindDialog.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/AddExistingDocumentDialogImpl.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/AddExistingDocumentDialogImpl.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/AddNewDocumentDialogImpl.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/AddNewDocumentDialogImpl.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/AnnotationSettingsDialogController.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/AnnotationSettingsDialogController.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/BaseDocumentFormatConfigurators.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/BaseDocumentFormatConfigurators.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/CreateAnnotationDialog.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/CreateAnnotationDialog.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/CreateAnnotationWidgetController.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/CreateAnnotationWidgetController.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/CreateObjectRelationDialogController.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/CreateObjectRelationDialogController.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/DialogUtils.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/DialogUtils.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/DocumentFormatComboboxController.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/DocumentFormatComboboxController.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/GObjectComboBoxController.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/GObjectComboBoxController.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/GraphUtils.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/GraphUtils.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/GScrollBar.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/GUIUtils.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/GUIUtils.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/ObjectViewTreeController.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/ObjectViewTreeController.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/PositionSelector.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/PositionSelector.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/ProjectDocumentComboBoxController.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/ProjectDocumentComboBoxController.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/ProjectTreeController.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/ProjectTreeController.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/ProjectTreeItemSelectorDialog.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/ProjectTreeItemSelectorDialog.h [code]
ugene-1.3.2+repack/src/core/src/util_gui/RangeSelector.cpp [code]
ugene-1.3.2+repack/src/core/src/util_gui/RangeSelector.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVAlignmentSupport.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVAlignmentSupport.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVAnnotationCreation.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVAnnotationCreation.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVClipboard.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVClipboard.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVConstants.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVGraphModel.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVGraphModel.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVSequenceObjectContext.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVSequenceObjectContext.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVSequenceWidget.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVSequenceWidget.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVSingleSequenceWidget.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVSingleSequenceWidget.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVSplitWidget.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/ADVSplitWidget.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotatedDNAView.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotatedDNAView.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotatedDNAViewFactory.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotatedDNAViewFactory.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotatedDNAViewState.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotatedDNAViewState.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotatedDNAViewTasks.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotatedDNAViewTasks.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotationsTreeView.cpp [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/AnnotationsTreeView.h [code]
ugene-1.3.2+repack/src/core/src/util_ov_annotated_dna/DetView.cpp [code]
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ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowDesignerPlugin.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowDocument.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowDocument.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowEditor.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowEditor.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowIOTasks.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowIOTasks.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowMetaDialog.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowMetaDialog.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowPalette.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowPalette.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowRunTask.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowRunTask.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowViewController.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowViewController.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowViewItems.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/WorkflowViewItems.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/BaseDocWorker.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/BaseDocWorker.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/CoreLib.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/CoreLib.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/DocActors.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/DocActors.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/DocWorkers.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/DocWorkers.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/FindWorker.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/FindWorker.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/GenericReadActor.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/GenericReadActor.h [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/GenericReadWorker.cpp [code]
ugene-1.3.2+repack/src/plugins/workflow_designer/src/library/GenericReadWorker.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/DIProperties.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/DIProperties.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/DIPropertiesTests.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/DIPropertiesTests.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconAlgorithm.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconAlgorithmTests.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconBuildDialogController.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconBuildWorker.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconIO.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconIO.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconIOWorkers.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconMath.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconMath.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconPlugin.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconPlugin.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconSearchDialogController.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconSearchTask.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconSearchTask.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconSearchWorker.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/sitecon/src/SiteconWorkers.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/HMMIO.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/HMMIO.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/HMMIOWorker.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/HMMIOWorker.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/TaskLocalStorage.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/TaskLocalStorage.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/uHMMPlugin.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/uHMMPlugin.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/aligneval.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/alphabet.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/altivec_algorithms.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/checksum.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/cluster.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/config.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/core_algorithms.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/fast_algorithms.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/funcs.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/histogram.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/iupac.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/masks.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/mathsupport.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/modelmakers.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/msa.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/plan7.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/prior.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/sqerror.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/sre_math.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/sre_random.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/sre_string.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/structs.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/tophits.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/trace.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/vectorops.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/hmmer2/weight.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_build/HMMBuildDialogController.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_build/HMMBuildDialogController.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_build/HMMBuildWorker.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_build/HMMBuildWorker.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_build/uhmmbuild.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_build/uhmmbuild.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_calibrate/HMMCalibrateDialogController.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_calibrate/HMMCalibrateDialogController.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_calibrate/uhmmcalibrate.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_calibrate/uhmmcalibrate.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/hmmer_ppu.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/hmmer_ppu.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchDialogController.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchDialogController.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchTask.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchTask.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchWorker.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/HMMSearchWorker.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/uhmmsearch.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/uhmmsearch.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/uhmmsearch_cell.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_search/uhmmsearch_cell.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_spu/hmmer_spu.c [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_spu/hmmer_spu.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_spu/hmmercell_spu.c [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_tests/uhmmerTests.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/uhmmer/src/u_tests/uhmmerTests.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MuscleAdapter.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MuscleAdapter.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MuscleAlignDialogController.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MusclePlugin.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MusclePlugin.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MuscleTask.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MuscleTask.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MuscleWorker.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/MuscleWorker.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/TaskLocalStorage.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/TaskLocalStorage.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/aligngivenpath.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/aligngivenpathsw.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/aligntwomsas.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/aligntwoprofs.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/aln.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/alpha.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/alpha.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/anchors.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/bittraceback.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/blosum62.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/blosumla.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/clust.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/clust.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/cluster.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/cluster.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/clustset.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/clustsetdf.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/clustsetmsa.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/clwwt.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/color.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/cons.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/diaglist.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/diaglist.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/diffobjscore.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/diffpaths.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/difftrees.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/difftreese.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/distcalc.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/distcalc.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/distfunc.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/distfunc.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/distpwkimura.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/domuscle.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/dosp.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/dpregionlist.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/dpreglist.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/dpreglist.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/drawtree.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/edgelist.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/edgelist.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/enumopts.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/enumopts.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/enums.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/enumtostr.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/estring.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/estring.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fasta.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fasta2.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fastclust.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fastdist.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fastdistjones.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fastdistkbit.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fastdistkmer.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fastdistmafft.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fastdistnuc.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/fastscorepath2.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/finddiags.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/finddiagsn.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/gapscoredimer.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbalign.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbalign352.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbaligndiag.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbalignle.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbalignsimple.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbalignsp.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbalignspn.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbalignss.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/glbalndimer.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/globals.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/globalslinux.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/globalsother.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/globalswin32.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/gonnet.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/gonnet.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/gotowt.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/henikoffweight.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/henikoffweightpb.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/html.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/hydro.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/intmath.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/intmath.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/local.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/main.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/makerootmsa.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/makerootmsab.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/maketree.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/mhack.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/mpam200.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/msa.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/msa.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/msa2.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/msadist.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/msadistkimura.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/msf.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/muscle.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/muscle.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/muscle_context.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/muscle_context.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/muscleout.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/nucmx.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/nwdasimple.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/nwdasimple2.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/nwdasmall.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/nwrec.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/nwsmall.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/objscore.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/objscore.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/objscore2.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/objscoreda.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/onexception.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/options.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/outweights.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/pam200mafft.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/params.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/params.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/phy.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/phy2.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/phy3.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/phy4.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/phyfromclust.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/phyfromfile.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/physeq.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/phytofile.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/posgap.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/ppscore.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/profdb.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/profile.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/profile.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/profilefrommsa.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/progalign.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/progress.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/progressivealign.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/pwpath.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/pwpath.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/readmx.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/realigndiffs.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/realigndiffse.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/refine.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/refinehoriz.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/refinesubfams.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/refinetree.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/refinetreee.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/refinevert.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/refinew.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/savebest.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/scoredist.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/scoregaps.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/scorehistory.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/scorehistory.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/scorepp.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/seq.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/seq.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/seqvect.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/seqvect.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/setblosumweights.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/setgscweights.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/setnewhandler.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/spfast.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/sptest.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/stabilize.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/subfam.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/subfams.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/sw.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/termgaps.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/textfile.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/textfile.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/threewaywt.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/timing.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/tomhydro.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/traceback.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/tracebackopt.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/tracebacksw.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/tree.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/treefrommsa.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/types.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/typetostr.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/unixio.h [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/upgma2.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/usage.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/validateids.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/vtml2.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/muscle/writescorefile.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.cpp [code]
ugene-1.3.2+repack/src/plugins_3rdparty/umuscle/src/umuscle_tests/umuscleTests.h [code]
ugene-1.3.2+repack/src/ugene/src/AppContextImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/AppGlobals.h [code]
ugene-1.3.2+repack/src/ugene/src/CorePlugin.h [code]
ugene-1.3.2+repack/src/ugene/src/CoreServiceTypes.h [code]
ugene-1.3.2+repack/src/ugene/src/DocumentFormatRegistryImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/DocumentFormatRegistryImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/IOAdapterRegistryImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/IOAdapterRegistryImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/Main.cpp [code]
ugene-1.3.2+repack/src/ugene/src/SettingsImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/SettingsImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/AppSettingsDialogController.cpp [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/AppSettingsDialogController.h [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/AppSettingsDialogTree.h [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/AppSettingsGUIImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/AppSettingsGUIImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/AppSettingsImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/AppSettingsImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/logview_settings/LogSettingsGUIController.cpp [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/logview_settings/LogSettingsGUIController.h [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/network_settings/NetworkSettingsGUIController.cpp [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/network_settings/NetworkSettingsGUIController.h [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.cpp [code]
ugene-1.3.2+repack/src/ugene/src/app_settings/user_apps_settings/UserApplicationsSettingsGUIController.h [code]
ugene-1.3.2+repack/src/ugene/src/logview/LogCache.cpp [code]
ugene-1.3.2+repack/src/ugene/src/logview/LogCache.h [code]
ugene-1.3.2+repack/src/ugene/src/logview/LogSettings.cpp [code]
ugene-1.3.2+repack/src/ugene/src/logview/LogSettings.h [code]
ugene-1.3.2+repack/src/ugene/src/logview/LogView.cpp [code]
ugene-1.3.2+repack/src/ugene/src/logview/LogView.h [code]
ugene-1.3.2+repack/src/ugene/src/main_window/AboutDialogController.cpp [code]
ugene-1.3.2+repack/src/ugene/src/main_window/AboutDialogController.h [code]
ugene-1.3.2+repack/src/ugene/src/main_window/CheckUpdatesTask.cpp [code]
ugene-1.3.2+repack/src/ugene/src/main_window/CheckUpdatesTask.h [code]
ugene-1.3.2+repack/src/ugene/src/main_window/DockManagerImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/main_window/DockManagerImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/main_window/MainWindowImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/main_window/MainWindowImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/main_window/MDIManagerImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/main_window/MDIManagerImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/main_window/MenuManager.cpp [code]
ugene-1.3.2+repack/src/ugene/src/main_window/MenuManager.h [code]
ugene-1.3.2+repack/src/ugene/src/main_window/ShutdownTask.cpp [code]
ugene-1.3.2+repack/src/ugene/src/main_window/ShutdownTask.h [code]
ugene-1.3.2+repack/src/ugene/src/main_window/ToolBarManager.cpp [code]
ugene-1.3.2+repack/src/ugene/src/main_window/ToolBarManager.h [code]
ugene-1.3.2+repack/src/ugene/src/plugin_support/PluginSupportImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/plugin_support/PluginSupportImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/plugin_support/ServiceRegistryImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/plugin_support/ServiceRegistryImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/plugin_viewer/PluginViewerController.cpp [code]
ugene-1.3.2+repack/src/ugene/src/plugin_viewer/PluginViewerController.h [code]
ugene-1.3.2+repack/src/ugene/src/plugin_viewer/PluginViewerImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/plugin_viewer/PluginViewerImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/project_support/ProjectImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/project_support/ProjectImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/project_support/ProjectLoaderImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/project_support/ProjectLoaderImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/project_support/ProjectServiceImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/project_support/ProjectServiceImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/project_support/ProjectTasks.cpp [code]
ugene-1.3.2+repack/src/ugene/src/project_support/ProjectTasks.h [code]
ugene-1.3.2+repack/src/ugene/src/project_view/BuiltInObjectViews.cpp [code]
ugene-1.3.2+repack/src/ugene/src/project_view/ProjectViewDocTree.cpp [code]
ugene-1.3.2+repack/src/ugene/src/project_view/ProjectViewDocTree.h [code]
ugene-1.3.2+repack/src/ugene/src/project_view/ProjectViewImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/project_view/ProjectViewImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/script_registry/ScriptManagerView.cpp [code]
ugene-1.3.2+repack/src/ugene/src/script_registry/ScriptManagerView.h [code]
ugene-1.3.2+repack/src/ugene/src/script_registry/ScriptManagerWidgetImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/script_registry/ScriptManagerWidgetImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/task_scheduler/TaskSchedulerImpl.cpp [code]
ugene-1.3.2+repack/src/ugene/src/task_scheduler/TaskSchedulerImpl.h [code]
ugene-1.3.2+repack/src/ugene/src/task_view/TaskStatusBar.cpp [code]
ugene-1.3.2+repack/src/ugene/src/task_view/TaskStatusBar.h [code]
ugene-1.3.2+repack/src/ugene/src/task_view/TaskViewController.cpp [code]
ugene-1.3.2+repack/src/ugene/src/task_view/TaskViewController.h [code]

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